Investing using an IRA-Owned LLC

An IRA LLC, or Checkbook IRA, is a self-directed retirement account strategy that lets investors create an LLC owned by their IRA. This setup gives greater control over retirement funds, allowing investors to manage transactions in assets like real estate, private placements, and other alternatives without needing custodian processing. 

Introduction

An IRA LLC, or Checkbook IRA, is a legal structure designed to give investors direct control over their Self-Directed IRA investments. This setup involves creating a Limited Liability Company (LLC) where the self-directed IRA owns 100% of the LLC. This arrangement enables the IRA holder, acting as the LLC’s manager, to bypass custodian approvals for transactions, facilitating faster and more flexible investment decisions across various asset classes, such as real estate, private equity, and precious metals.
 

Download PDF: Beginner’s Guide: Self-Directed IRA LLCs

Beginner's Guide: Self-Directed IRA LLCs

8 Components of an IRA LLC Setup

1. Ownership: 

  • The self-directed IRA is the sole member of the LLC.  
  • The LLC is treated as a disregarded entity for tax purposes if it is single-member, meaning income and gains flow directly to the IRA without requiring an additional tax filing for the LLC. 
  • For multi-member IRA LLCs (e.g., multiple IRAs or investors owning the LLC), the entity is treated as a partnership, which requires the filing of a partnership tax return (Form 1065) and issuance of K-1s to members. 
     

2. Management: 

  • The IRA holder serves as the LLC’s non-compensated manager, controlling its checkbook and investment decisions. 
  • The manager is prohibited from receiving compensation or benefits for managing the LLC, as this would constitute a prohibited transaction. 
  • The IRA holder can sign contracts, execute purchases, and manage expenses directly through the IRA owned LLC’s bank checking account, eliminating the need for custodian processing in day-to-day transactions. 
     

3. Compliance: 

  • The LLC must strictly avoid prohibited transactions as outlined by the IRS under IRC Section 4975. Prohibited transactions include: 
  • Self-dealing (e.g., using LLC assets for personal benefit). 
  • Transactions with disqualified persons (e.g., transactions or payments to the IRA holder, their spouse, or certain family members). 
  • Providing indirect benefits to disqualified persons. (e.g. allowing a disqualified person such as the IRA owner’s child to live at a rental property owned the the SDIRA or IRA LLC.  
  • The LLC’s operating agreement must include specific language to ensure compliance with IRS regulations regarding IRA-owned entities. 
  • Investments must remain at arm’s length, and personal and LLC activities must remain entirely separate to avoid jeopardizing the tax-advantaged status of the IRA. 
 

4. Funding: 

  • The IRA funds are invested from the custodian (Directed IRA) to the LLC’s business checking account. This investment is treated as a capital contribution and is not considered a taxable distribution. The IRA is then the owner of the LLC and on the IRA account’s records and statements, and the LLC is an asset of the IRA.  
  • All investment income (e.g., rental income, profits from asset sales) and expenses (e.g., property taxes, repairs) must flow e through the LLC’s business checking account. 
  • Personal funds cannot be commingled in the LLC account. 
     

5. Investments: 

  • The IRA LLC structure allows investments in a wide variety of alternative assets, such as real estate, private businesses, tax liens, foreign investments, precious metals (meeting IRS purity standards), and more. 
  • Investments must align with IRS guidelines. For example, buying collectibles (e.g., artwork) or life insurance policies is prohibited. 
  • If the LLC generates UBTI or Unrelated Debt-Financed Income (UDFI), the IRA must report and pay taxes using Form 990-T. 
     

6. Reporting: 

  • Provide an annual update to your IRA custodian on the  value of the LLC so that the IRAs record of value is accurate.  
  • Multi-member LLCs require the filing of a partnership tax return (Form 1065) and distribution of K-1s to members. 
  • Single-member LLCs are disregarded entities for tax purposes and are not required to file a federal tax retrun.   
     

7. Liability and Legal Considerations: 

  • The LLC structure provides a layer of liability protection between the IRA, the IRA owner, and the LLCs  investments. For example, if the LLC owns real estate and is sued by a tenant, the IRA’s other assets as well as the IRA owner’s other assets remain protected. 
  • The LLC must follow all state filing requirements, including registering the LLC with the Secretary of State, maintaining an agent for service of process, and filing annual reports or renewals as required by state law. 
     

8. Tax Implications: 

  • While the IRA itself is tax-deferred (or tax-free for Roth IRAs), certain activities within the LLC may trigger taxable events, such as: 
  • UBTI, which occurs when the LLC earns income from an active trade or business (e.g., operating a business within the LLC). 
  • UDFI, which applies when investments are financed with debt, such as a mortgage on a rental property. 
  • Any tax liability must be paid from the IRA’s funds, not personal funds, to maintain compliance with IRS rules. 

Why Use a Checkbook IRA LLC

1. Checkbook Control: Investors gain direct control over their retirement funds, allowing them to make investment decisions quickly without waiting for custodian processing. This is critical for time-sensitive investments like real estate, private debt, or private equity deals. For example, an investor can immediately wire funds to secure a property, asset, or pay contractors for a rehab project.

 

2. Flexibility in Investment Options: A Checkbook IRA LLC allows for streamlined access to a wide range of alternative assets, such as real estate, private lending, cryptocurrency, tax liens, and private equity. While these options are available in all self-directed IRAs (SDIRAs), an IRA LLC can make certain investments, like purchasing rental properties or issuing short-term loans, faster and more convenient by giving you control over the funds. 

 

3. Faster Transactions: With direct access to the LLC’s bank checking account, investors can act quickly on opportunities, avoiding delays caused by custodian processing times. For example, placing a bid on a property at auction or funding a private loan within hours. 

 

4. Privacy and Asset Protection: Transactions are conducted in the name of the LLC, not the individual or IRA custodian, providing an additional layer of privacy and shielding personal details. The LLC structure also offers asset protection, limiting liability to the LLC’s assets. For example, if a lawsuit arises from a rental property owned by the LLC, personal assets and other IRA funds are protected. 

 

5. Streamlined Administration: The LLC simplifies the management of investments with frequent transactions, such as paying property expenses or managing multiple investments, by consolidating them under one entity. For instance, an investor can use the LLC’s bank checking account to pay recurring expenses like property taxes or maintenance fees without involving the custodian. 

 

6. Cost Efficiency for Active Investors: For investors with frequent transactions, the Checkbook IRA LLC can reduce custodian transaction fees, as all transactions are handled directly through the LLC’s bank account. For example, an investor managing multiple rental properties can save on transaction fees by using the LLC bank checking account for all payments and income deposits. 

 

7. Administrative Convenience for Complex Investments: The LLC structure is particularly beneficial for managing complex or multi-step investments, such as real estate rehabs or multi-asset portfolios. For example, an investor can manage multiple contractors and vendors for a property rehab project directly through the LLC. 

 

8. Long-Term Wealth Building: The Checkbook IRA LLC allows investors to build and manage a diversified portfolio of alternative assets, potentially leading to higher returns over time. For instance, an investor can reinvest rental income or loan repayments into new opportunities without custodian processing.. 

How to Set Up a Checkbook IRA LLC

1. Open a Self-Directed IRA 

 

2. Consult with Experienced Attorneys 

  • Schedule a consultation with KKOS Lawyers to avoid setup pitfalls. 
  • Receive expert guidance ensuring the LLC complies with tax regulations and prohibited transaction rules. 
 

3. Create the IRA LLC 

  • Log in to your Directed IRA account and submit an IRA/LLC Application. 
  • Ensure the LLC is Manager-Managed and aligns with IRS requirements.
 

4. Fund and Operate the LLC 

  • Invest your IRA funds into the LLC after Directed IRA’s review of the documents. Open an LLC business checking account and use it for all investment-related transactions (e.g., wiring funds for property purchases). 
 

5. Stay Compliant and Maintain Records 

  • Submit annual filings to keep the LLC active with the state. 
  • Provide Directed IRA with annual valuations of the LLC’s assets. Maintain all financial records meticulously to demonstrate compliance. 


Download PDF:
 Beginner’s Guide: Self-Directed IRA LLCs

Common Mistakes to Avoid

  • Improper Setup: One of the most common mistakes is using generic LLC templates found online or from non-specialized providers when setting up an IRA-owned LLC. These templates often lack critical IRS-compliant language specifically required for an LLC that will be owned by an IRA. Without this language, the LLC may not meet IRS requirements, leading to rejection of funding by any IRA custodian who allows for self-directed IRAs. . It’s essential to work with professionals familiar with IRA-owned LLCs to ensure proper setup and compliance from the start. 
 
  • Commingling Funds: One of the strictest rules for an IRA-owned LLC is to maintain a clear separation between personal funds and the LLC’s assets. Any contributions to the LLC must flow through the IRA custodian to maintain proper oversight and compliance. Depositing personal money into the LLC account is strictly prohibited and can trigger severe penalties, including the disqualification of the IRA itself. Proper record-keeping and adherence to this rule is critical to avoid serious legal and financial repercussions. 
 
  • Violating Prohibited Transaction Rules: The internal revenue code prohibited transaction” for an IRA-owned LLC. Examples include purchasing property with LLC funds and then living in it, allowing family members or disqualified persons (such as parents, children, or spouses) to use LLC-owned properties, or covering personal expenses with LLC assets. Even seemingly minor violations, like using LLC funds for personal travel unrelated to investment activities, can result in penalties or the disqualification of the entire IRA. It is crucial to understand and abide by these boundaries to protect the integrity of the IRA and the LLC. 
 
  • Neglecting Compliance Reporting: Compliance doesn’t end once the IRA-owned LLC is set up. Ongoing reporting obligations, such as state annual report filings and annual LLC valuations that must be provided to the IRA custodian, are necessary to maintain the LLC’s status and avoid penalties. Missing these filings or failing to submit accurate valuations could lead to fines, additional taxes, or even the LLC losing its legal status. Staying on top of these requirements is vital for long-term success and avoiding unnecessary complications. 

Frequently Asked Questions

What is a Checkbook IRA LLC?

A Checkbook IRA LLC is a legal structure that gives you more control over your retirement funds. With this setup, your self-directed IRA owns an LLC, and you, as the manager of the LLC, can make investments directly from the LLC’s bank account without requiring custodian approval for each transaction. 

  • Direct control over investments without delays from custodian processing. 
  • Ability to invest in diverse asset classes, including time-sensitive opportunities like real estate auctions. 
  • Potential cost savings on transaction fees, or multiple assets typically charged by custodians. 
  • Benefit from LLC limited liability protection for your IRA assets   

This structure is ideal for investors interested in assets that require frequent transactions, like flipping real estate, managing rental properties, or lending money through short-term notes. It’s also helpful for those investing in time-sensitive opportunities where custodial processing times could cause problems. 

Directed IRA is an industry-leading SDIRA provider and supports account holders wanting to use the IRA LLC structure (open a Self-Directed IRA). Eligible account options include: 

 

  • Traditional IRA 
  • Roth IRA 
  • SEP IRA 
  • Health Savings Account (HSA) 
  • Solo 401(k) 

Yes, a Checkbook IRA LLC can hold a variety of asset types, including: 

  • Real estate (rentals, flips, vacant land) 
  • Private equity or businesses 
  • Cryptocurrency 
  • Promissory notes or private lending 

Prohibited transactions are actions that violate IRS rules, such as: 

 

  • Using LLC funds for personal expenses. 
  • Renting or selling property owned by the LLC to yourself or close family members. 
  • Lending money to disqualified persons (e.g., yourself, a spouse, or your children). 
    Failing to avoid prohibited transactions can lead to severe penalties, including disqualifying your entire IRA. 

If your IRA owns 100% of the LLC, the LLC is a “disregarded entity” for tax purposes and generally does not need to file a federal tax return. However, state filing fees and compliance requirements (e.g., annual fees, franchise taxes) still apply. If the LLC has multiple members or leverages debt-financing, additional tax filings may be required. Seek guidance from your tax advisor. 

Yes, the LLC must comply with IRS rules and include specific language in its documents. For instance:

 

  • It must be manager-managed (not member-managed). 
  • The operating agreement must restrict prohibited transactions. 
  • The LLC must recognize that it is owned by an IRA, list the IRA properly as the member and follow all retirement account regulations. 
  • The signature block for the LLC operating agreement must be drafted for signature by the IRA custodian on behalf of the IRA.

Yes, multiple IRAs (or individuals) can pool funds to invest in one LLC. Ownership percentages are based on the amount of funds each party contributes (. Note that this requires a multi-member LLC, which has additional complexity, including tax filings. 

More Resources on Investing using an IRA-Owned LLC​

Beginner’s Guide: How to Self-Direct Your IRA

Directed IRA Webinars

Self-Directed IRA Summit

Directed IRA Podcast

Beginner's Guide:
How to Self-Direct Your IRA

By downloading Beginner's Guide: How to Self-Direct Your IRA, you opt-in to receive marketing communications from Directed Trust Company. Unsubscribe at anytime.

#1 Book
on Self-Directed IRAs

Mat Sorensen, Attorney, CEO, and Founder of Directed IRA, wrote the #1 book on self-directed IRAs – selling over 50,000 copies nationwide. The Self Directed IRA Handbook is a comprehensive guide written for both investors and advisors alike. Download your free copy today!

By downloading The Self-Directed IRA Handbook, you opt-in to receive marketing communications from Directed Trust Company. Unsubscribe at anytime.